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Friday, March 24, 2023

December in preprints


Welcome to our month-to-month trawl for developmental biology (and associated) preprints.

The preprints this month are hosted on bioRxiv – use these hyperlinks to get to the part you need.

Developmental biology

Cell Biology

Modelling

Evaluations

Instruments & Sources

Analysis observe & training

Developmental biology

| Patterning & signalling

Drosophila egg chambers from Halder, et al.

TOR signalling regulates epithelial cell form transition in Drosophila oogenesis
Sudipta Halder, Gaurab Ghosh, Budhaditya Gayen, Mohit Prasad

The bHLH-PAS transcriptional complicated Sim:Tgo performs energetic roles in late oogenesis to advertise follicle maturation and ovulation
Rebecca Oramas, Elizabeth Knapp, Baosheng Zeng, Jianjun Solar

LHX2 in germ cells management tubular group within the creating mouse testis
Neha Singh, Domdatt Singh, Anshul Bhide, Richa Sharma, Shilpa Bhowmick, Vainav Patel, Deepak Modi

Vangl facilitates mesenchymal thinning throughout lung sacculation independently of Celsr
Sarah V. Paramore, Carolina Trenado-Yuste, Rishabh Sharan, Danelle Devenport, Celeste M. Nelson

Coupling dynamics of 2D Notch-Delta signalling
Francisco Berkemeier, Karen Web page

Molecular characterization of Left-Proper symmetry breaking within the mouse embryo
Richard C.V. Tyser, Ximena Ibarra-Soria, Monique Pedroza, Antonio M.A. Miranda, Teun A.H. van den Model, Antonio Scialdone, John C. Marioni, Shankar Srinivas

Intracellular fraction of zona pellucida protein 3 is required for the oocyte to embryo transition in mice
Steffen Israel, Julia Seyfarth, Thomas Nolte, Hannes C.A. Drexler, Georg Fuellen, Michele Boiani

4931414P19Rik: A Chemoattractant Secreted by Neural Progenitors Modulates Microglia Activation and Neuronal Migration Throughout Mammalian Mind Improvement
Ivan Mestres, Federico Calegari

Coronary vessel meeting includes patterned endocardial sprouting and tip-cell-to artery specification
Elena Cano, Jennifer Paech, Masatoshi Kanda, Eric L. Lindberg, Irene Hollfinger, Caroline Brauening, Cornelius Fischer, Norbert Hübner, Holger Gerhardt

Cylicins are a structural element of the sperm calyx being indispensable for male fertility in mice and human
Simon Schneider, Andjela Kovacevic, Michelle Mayer, Ann-Kristin Dicke, Lena Arévalo, Sophie A. Koser, Jan N. Hansen, Samuel Younger, Christoph Brenker, Sabine Kliesch, Dagmar Wachten, Gregor Kirfel, Timo Strünker, Frank Tüttelmann, Hubert Schorle

mPSC colonies from Aguilar-Hidalgo, et al.

Symmetry-breaking in adherent pluripotent stem cell-derived developmental patterns
Daniel Aguilar-Hidalgo, Joel Ostblom, M Mona Siu, Benjamin McMaster, Tiam Heydari, Nicolas Werschler, Mukul Tewary, Peter Zandstra

The contribution of maternal oral, vaginal, and intestine microbiota to the creating offspring intestine
Amber L. Russell, Erin Donovan, Nicole Seilhamer, Melissa Siegrist, Craig L. Franklin, Aaron C. Ericsson

An vital position for triglyceride in regulating spermatogenesis
Charlotte F. Chao, Yanina-Yasmin Pesch, Huaxu Yu, Chenjingyi Wang, Maria Aristizabal, Tao Huan, Man Tanentzapf, Elizabeth J. Rideout

Distinct molecular profile of the chick Organizer as a stem zone throughout axial elongation
Timothy R. Wooden, Iwo Kucinski, Octavian Voiculescu

A number of pathways for reestablishing PAR polarity in C. elegans embryo
Laurel A. Koch, Lesilee S. Rose

Polychrome labeling reveals skeletal triradiate and elongation dynamics and abnormalities in patterning cue-perturbed embryos
Abigail E. Descoteaux, Daniel T. Zuch, Cynthia A. Bradham

Sfrp2 is a multifunctional regulator of rodent shade patterns
Matthew R. Johnson, Sha Li, Christian F. Guerrero-Juarez, Pearson Miller, Benjamin J. Brack, Sarah A. Mereby, Charles Feigin, Jenna Gaska, Qing Nie, Jaime A. Rivera-Perez, Alexander Ploss, Stanislav Y. Shvartsman, Ricardo Mallarino

FGF2 and BMP4 affect on FGFR2 dynamics in the course of the segregation of epiblast and primitive endoderm cells within the pre-implantation mouse embryo
Marcelo D. Goissis, Brian Bradshaw, Eszter Posfai, Janet Rossant

Proof implicating sequential dedication of the founder lineages within the human blastocyst by order of hypoblast gene activation
Elena Corujo-Simon, Arthur H. Radley, Jennifer Nichols

A bioelectrical section transition patterns the primary beats of a vertebrate coronary heart
Invoice Z. Jia, Yitong Qi, J. David Wong-Campos, Sean G. Megason, Adam E. Cohen

Stat3 has a special position in axon development throughout improvement than it does in axon regeneration after harm
Qinwen Duan, Hongfei Zheng, Yanjun Qin, Jizhou Yan, Shawn Burgess, Jian Wang, Chunxin Fan

Zebrafish telencephalon from Doostdar, et al.

Cell coupling compensates for modifications in single-cell Her6 dynamics and offers phenotypic robustness
Parnian Doostdar, Joshua Hawley, Elli Marinopoulou, Robert Lea, Veronica Biga, Nancy Papalopulu, Ximena Soto Rodriguez

Twin capabilities of labial resolve the Hox logic of chelicerate head segments
Guilherme Gainett, Benjamin C. Klementz, Pola O. Blaszczyk, Heather Bruce, Nipam Patel, Prashant P. Sharma

| Morphogenesis & mechanics

Phenotypical Rescue of Bmp15 Deficiency by Mutation of Inhibin α (inha) Offers Novel Clues to How Bmp15 Controls Zebrafish Folliculogenesis
Yue Zhai, Cheng Zhao, Ruijing Geng, Kun Wu, Mingzhe Yuan, Nana Ai, Wei Ge

Systematic characterization of Drosophila RhoGEF/GAP localizations uncovers regulators of mechanosensing and junction formation throughout epithelial cell division
Florencia di Pietro, Mariana Osswald, José M De las Heras, Ines Cristo, Jesus Lopez- Homosexual, Zhimin Wang, Stéphane Pelletier, Isabelle Gaugué, Adrien Leroy, Charlotte Martin, Eurico Morais-De-Sá, Yohanns Bellaïche

Actomyosin reworking regulates biomineral formation, development and morphology throughout eukaryote skeletogenesis
Eman Hijaze, Tsvia Gildor, Ronald Seidel, Mark Winter, Luca Bertinetti, Majed Layous, Yael Politi, Smadar Ben-Tabou de-Leon

Organ-Founder Stem Cells Mediate Put up-Embryonic Neuromast Formation In Medaka
Karen Gross, Tuğçe Raif, Ali Seleit, Jasmin Onistschenko, Isabel Krämer, Lazaro Centanin

Native angiogenic interaction of Vegfc/d and Vegfa drives fenestrated capillary community formation within the choroid plexuses and circumventricular organs
Sweta Parab, Olivia A. Card, Qiyu Chen, Luke D. Buck, Rachael E. Fast, William F. Horrigan, Gil Levkowitz, Benoit Vanhollebeke, Ryota L. Matsuoka

Core PCP mutations have an effect on brief time mechanical properties however not tissue morphogenesis within the Drosophila pupal wing
Romina Piscitello-Gómez, Franz S Gruber, Abhijeet Krishna, Charlie Duclut, Carl D Modes, Marko Popović, Frank Jülicher, Natalie A Dye, Suzanne Eaton

A mechanical wave travels alongside a genetic information to drive the formation of an epithelial furrow
Anna Popkova, Sophie Pagnotta, Matteo Rauzi

Scavenger receptor endocytosis controls apical membrane morphogenesis within the Drosophila airways
Ana S. Pinheiro, Vasilios Tsarouhas, Kirsten Senti, Badrul Arefin, Christos Samakovlis

Formation of the mouse placode from Villeneuve, et al.

Mechanical forces throughout compartments coordinate cell form and destiny transitions to generate tissue structure
Clémentine Villeneuve, Ali Hashmi, Irene Ylivinkka, Elizabeth Lawson-Keister, Yekaterina A. Miroshnikova, Carlos Pérez-González, Bhagwan Yadav, Tao Zhang, Danijela Matic Vignjevic, Marja L. Mikkola, M. Lisa Manning, Sara A. Wickström

Down-regulation of Drosophila Glutactin, a cholinesterase-like adhesion molecule of the basement membrane, impairs improvement, compromises grownup operate and shortens lifespan
Pedro Alvarez-Ortiz, Shawna Guillemette, Rachel Humphrey, Bryan A. Ballif, Jim O. Vigoreaux

In situ quantification of osmotic stress inside dwelling embryonic tissues
Antoine Vian, Marie Pochitaloff, Shuo-Ting Yen, Sangwoo Kim, Jennifer Pollock, Yucen Liu, Ellen Sletten, Otger Campàs

MicroRNA-205 promotes hair regeneration by modulating mechanical properties of hair follicle stem cells
Jingjing Wang, Yuheng Fu, Wenmao Huang, Ritusree Biswas, Avinanda Banerjee, Joshua A. Broussard, Zhihai Zhao, Dongmei Wang, Glen Bjerke, Srikala Raghavan, Jie Yan, Kathleen J. Inexperienced, Rui Yi

Modeling epithelial tissue and cell deformation dynamics utilizing a viscoelastic slab sculpted by floor forces
XinXin Du, Michael Shelley

| Genes & genomes

The a number of lncRNAs encoding hsrω gene is important for oogenesis in Drosophila
Rima Saha, Subhash C. Lakhotia

ZBTB20 is Important for Cochlear Maturation and Listening to in Mice
Zhifang Xie, Xian-Hua Ma, Qiu-Fang Bai, Jie Tang, Jian-He Solar, Fei Jiang, Wei Guo, Chen-Ma Wang, Rui Yang, Yin-Chuan Wen, Fang-Yuan Wang, Yu-Xia Chen, Hai Zhang, David Z. He, Matthew W. Kelley, Shiming Yang, Weiping J. Zhang

Regulatory modifications related to the pinnacle to trunk developmental transition
Patrícia Duarte, Rion Brattig Correia, Ana Nóvoa, Moisés Mallo

A MTA2-SATB2 chromatin complicated restrains colonic plasticity towards small gut by retaining HNF4A at colonic chromatin
Wei Gu, Xiaofeng Huang, Pratik N. P. Singh, Ying Lan, Jesus M Gomez-Salinero, Shahin Rafii, Mike Verzi, Ramesh Shivdasani, Qiao Zhou

Cell-specific occupancy dynamics between the pioneer-like issue Opa/ZIC and Ocelliles/OTX regulate early head improvement in embryos
Kelli D. Fenelon, Fan Gao, Priyanshi Borad, Shiva Abbasi, Lior Pachter, Theodora Koromila

 Expression heatmap of MOV10-bound transcripts from Guan, et al.

The MOV10 RNA helicase is a dosage-dependent host restriction issue for LINE1 retrotransposition in mice
Yongjuan Guan, Hongyan Gao, N. Adrian Leu, Anastassios Vourekas, Panagiotis Alexiou, Manolis Maragkakis, Zissimos Mourelatos, Guanxiang Liang, P. Jeremy Wang

New enhancer-promoter interactions are gained throughout tissue differentiation and replicate modifications in E/P exercise
Tim Pollex, Adam Rabinowitz, Maria Cristina Gambetta, Raquel Marco-Ferreres, Rebecca R. Viales, Aleksander Jankowski, Christoph Schaub, Eileen E.M. Furlong

Associations of Socioeconomic Disparities With Buccal DNA-Methylation Measures Of Organic Growing old
L. Raffington, T. Schwaba, M. Aikins, D. Richter, G.G. Wagner, Ok.P. Harden, D.W. Belsky, E.M. Tucker-Drob

ythdf2(ch200) and its position in improvement of the early zebrafish embryo
Alana V. Beadell

DNA methylation entropy is related to DNA sequence options and developmental epigenetic divergence
Yuqi Fang, Zhicheng Ji, Weiqiang Zhou, Jordi Abante, Michael A. Koldobskiy, Hongkai Ji, Andrew P. Feinberg

Longevity and rejuvenation results of cell reprogramming are decoupled from lack of somatic id
Dmitrii Kriukov, Ekaterina E. Khrameeva, Vadim N. Gladyshev, Sergey E. Dmitriev, Alexander Tyshkovskiy

Multiplex profiling of developmental enhancers with quantitative, single-cell expression reporters
Jean-Benoît Lalanne, Samuel G. Regalado, Silvia Domcke, Diego Calderon, Beth Martin, Tony Li, Chase C. Suiter, Choli Lee, Cole Trapnell, Jay Shendure

Pioneer transcription elements coordinate energetic and repressive gene expression states to manage cell destiny
Satoshi Matsui, Marissa Granitto, Morgan Buckley, Joseph Shiley, William Zacharias, Christopher Mayhew, Hee-Woong Lim, Makiko Iwafuchi

Neuron sorts within the creating mouse CNS could be divided into a number of epigenomic and transcriptomic lessons
Sami Kilpinen, Heidi Heliölä, Kaia Achim

| Stem cells, regeneration & illness modelling

Neuroendocrine management of catch-up development in Drosophila
Diana M Vallejo, Ernesto Saez, Lucia García-López, Roberto Santoro, Maria Dominguez

The shh limb enhancer is activated in patterned limb regeneration however not in hypomorphic limb regeneration in Xenopus laevis
Reimi Tada, Takuya Higashidate, Takanori Amano, Shoma Ishikawa, Chifuyu Yokoyama, Saki Nara, Koshiro Ishida, Akane Kawaguchi, Haruki Ochi, Hajime Ogino, Nayuta Yakushiji-Kaminatsui, Joe Sakamoto, Yasuhiro Kamei, Koji Tamura, Hitoshi Yokoyama

GSK3 and Lamellipodin stability lamellipodial protrusions and focal adhesion maturation in mouse neural crest migration
Lisa Dobson, William B. Barrell, Zahra Seraj, Steven Lynham, Sheng-Yuan Wu, Matthias Krause, Karen J. Liu

The Tip60/Ep400 chromatin reworking complicated impacts primary metabolic and mobile capabilities in cranial neural crest-derived tissue throughout early orofacial improvement
Sebastian Gehlen-Breitbach, Theresa Schmid, Matthias Weider, Michael Wegner, Lina Gölz

FOXC2 marks and maintains the primitive spermatogonial stem cells subpopulation within the grownup testis
Zhipeng Wang, Cheng Jin, Pengyu Li, Yiran Li, Jielin Tang, Zhixin Yu, Tao Jiao, Jinhuan Ou, Han Wang, Dingfeng Zou, Mengzhen Li, Xinyu Mang, Jun Liu, Yan Lu, Kai Li, Ning Zhang, Shiying Miao, Jia Yu, Linfang Wang, Wei Music

E4F1 COORDINATES PYRUVATE METABOLISM AND THE ACTIVITY OF THE ELONGATOR COMPLEX TO ENSURE PROTEIN TRANSLATION FIDELITY DURING NEURONAL DEVELOPMENT
Di Michele Michela, Attina Aurore, Laguesse Sophie, De Blasio Carlo, Wendling Olivia, Frenois Francois-Xavier, Encislai Betty, Fuentes Maryse, Jahanault-Tagliani Céline, Rousseau Mélanie, Roux Pierre-François, Guégan Justine, Buscail Yoan, Dupré Pierrick, Michaud Henri-Alexandre, Rodier Geneviève, Bellvert Floriant, Kulyk Barbier Hannah, Ferraro Peyret Carole, Mathieu Hugo, Chaveroux Cédric, Pirot Nelly, Rubio Lucie, Torro Adeline, Compan Vincent, Sorg Tania, Ango Fabrice, David Alexandre, Lebigot Elise, Legati Andrea, Hirtz Christophe, Ghezzi Daniele, Nguyen Laurent, Sardet Claude, Lacroix Matthieu, Le Cam Laurent

Mouse sperm from Merges, et al.

Actl7b-deficiency results in mislocalization of LC8 sort dynein mild chains and disruption of murine spermatogenesis
Gina E. Merges, Lena Arévalo, Keerthika Lohanadan, Dirk G. de Rooij, Melanie Jokwitz, Walter Witke, Hubert Schorle

Transcriptomic panorama and potential therapeutic targets for human testicular growing old revealed by single-cell RNA sequencing
Kai Xia, Siyuan He, Peng Luo, Lin Dong, Feng Gao, Xuren Chen, Yunlin Ye, Yong Gao, Yuanchen Ma, Yadong Zhang, Qiyun Yang, Dayu Han, Xin Feng, Zi Wan, Hongcai Cai, Qiong Ke, Tao Wang, Weiqiang Li, Xiang’an Tu, Xiangzhou Solar, Chunhua Deng, Andy Peng Xiang

Single-cell dynamics of core pluripotency elements in human pluripotent stem cells
Sonja Mihailovic, Samuel C. Wolff, Katarzyna M. Kedziora, Nicole M. Smiddy, Margaret A. Redick, Yuli Wang, Guang Ken Lin, Tarek M. Zikry, Jeremy Simon, Travis Ptacek, Nancy L. Allbritton, Adriana S. Beltran, Jeremy E. Purvis

Distinct stem-like cell populations facilitate practical regeneration of the Cladonema medusa tentacle
Sosuke Fujita, Erina Kuranaga, Masayuki Miura, Yu-ichiro Nakajima

Exploring cognitive, behavioural and autism trait community topology in very preterm and term-born youngsters
Marguerite Leoni, Lucy D. Vanes, Laila Hadaya, Dana Kanel, Paola Dazzan, Emily Simonoff, Serena Counsell, Francesca Happé, A. David Edwards, Chiara Nosarti

Disruption of fos causes craniofacial anomalies in creating zebrafish
Lorena Maili, Bhavna Tandon, Qiuping Yuan, Simone Menezes, S. Shahrukh Hashmi, Ariadne Letra, George T. Eisenhoffer, Jacqueline T. Hecht

Pleiotropy of autism-associated chromatin regulators
Micaela Lasser, Nawei Solar, Yuxiao Xu, Karen Regulation, Silvano Gonzalez, Belinda Wang, Vanessa Drury, Sam Drake, Yefim Zaltsman, Jeanselle Dea, Ethel Bader, Kate E. McCluskey, Matthew W. State, A. Jeremy Willsey, Helen Rankin Willsey

Administration of amniotic fluid stem cell extracellular vesicles promotes improvement of fetal hypoplastic lungs by immunomodulating lung macrophages
Lina Antounians, Rebeca Lopes Figueira, Bharti Kukreja, Elke Zani-Ruttenstock, Kasra Khalaj, Louise Montalva, Fabian Doktor, Mikal Obed, Matisse Blundell, Taiyi Wu, Cadia Chan, Richard Wagner, Martin Lacher, Michael D. Wilson, Brian T. Kalish, Augusto Zani

Early eye and forebrain improvement are facilitated by Bone Morphogenetic Protein antagonism
Johannes Bulk, Valentyn Kyrychenko, Philipp Rensinghoff, Stephan Heermann

Logical modelling of myelofibrotic microenvironment predicts dysregulated progenitor stem cell crosstalk
S. P. Chapman, E. Duprez, E. Remy

Transgenic porcine mannequin reveals two roles for LGR5 throughout lung improvement and homeostasis
Kathryn M. Polkoff, Nithin Ok. Gupta, Yanet Murphy, Ross Lampe, Jaewook Chung, Amber Carter, Jeremy M. Simon, Katherine Gleason, Adele Moatti, Preetish Ok. Murthy, Laura Edwards, Alon Greenbaum, Aleksandra Tata, Purushothama Rao Tata, Jorge A. Piedrahita

Transcriptional networks are dynamically regulated throughout cell cycle development in human Pluripotent Stem Cells
Anna Osnato, Stephanie Brown, Ludovic Vallier

Train reprograms the inflammatory panorama of a number of stem cell compartments throughout mammalian growing old
Ling Liu, Soochi Kim, Matthew T. Buckley, Jaime M. Reyes, Jengmin Kang, Lei Tian, Mingqiang Wang, Alexander Lieu, Michelle Mao, Cristina Rodriguez-Mateo, Heather Ishak, Mira Jeong, Joseph C. Wu, Margaret A. Goodell, Anne Brunet, Thomas A. Rando

| Plant improvement

The miR156-targeted SlSBP15 represses tomato shoot branching through modulating auxin transport and interacting with GOBLET and BRANCHED1b
Carlos Hernán Barrera-Rojas, Mateus Henrique Vicente, Diego Armando Pinheiro Brito, Eder M. Silva, Aitor Munoz Lopez, Leticia F. Ferigolo, Rafael Monteiro do Carmo, Carolina M. S. Silva, Geraldo F.F. Silva, Joao P. O. Correa, Marcela M. Notini, Luciano Freschi, Pilar Cubas, Fabio T.S. Nogueira

Physcomitrium patens from Cammarata, et al

The ratio of auxin to cytokinin controls leaf improvement and meristem initiation in Physcomitrium patens
Joseph Cammarata, Adrienne H. Ok. Roeder, Michael J. Scanlon

The canonical E2Fs along with RETINOBLASTOMA-RELATED are required to ascertain quiescence throughout plant improvement
Magdolna Gombos, Cécile Raynaud, Yuji Nomoto, Eszter Molnár, Rim Brik-Chaouche, Hirotomo Takatsuka, Ahmad Zaki, Dóri Bernula, David Latrasse, Keito Mineta, Fruzsina Nagy, Xiaoning He, Hidekazu Iwakawa, Erika Őszi, Jing An, Takamasa Suzuki, Csaba Papdi, Clara Bergis, Moussa Benhamed, László Bögre, Masaki Ito, Zoltán Magyar

Cytokinin synthesis and export from symbiotic root nodules coordinates shoot development with nitrogen fixation
Yumeng Chen, Jie Liu, Jieshun Lin, Yuda Purwana Roswanjaya, Marcin Nadzieja, Flavien Buron, Wouter Kohlen, Markus Geisler, Jens Stougaard, Dugald Reid

The Class VIII myosin ATM1 is required for root apical meristem operate
Damilola Olatunji, Natalie M. Clark, Dior R. Kelley

| Evo-devo

Convergent deployment of ancestral applications in the course of the evolution of mammalian flight membranes
Charles Y. Feigin, Jorge A. Moreno, Raul Ramos, Sarah A. Mereby, Ares Alivisatos, Wei Wang, Renée van Amerongen, Jasmin Camacho, John J. Rasweiler IV, Richard R. Behringer, Bruce Ostrow, Maksim V. Plikus, Ricardo Mallarino

Probing the evolutionary dynamics of whole-body regeneration inside planarian flatworms
Miquel Vila-Farré, Andrei Rozanski, Mario Ivanković, James Cleland, Jeremias N. Model, Felix Thalen, Markus Grohme, Stephanie von Kannen, Alexandra Grosbusch, Han T-Ok Vu, Carlos E. Prieto, Fernando Carbayo, Bernhard Egger, Christoph Bleidorn, John E. J. Rasko, Jochen C. Rink

Versatile parental care ensures robustness of post-embryonic improvement
Ahva L. Potticary, Christopher B. Cunningham, Allen J. Moore

Tooth improvement from Christensen, et al.

The developmental foundation for scaling of mammalian tooth dimension
Mona M. Christensen, Outi Hallikas, Rishi Das Roy, Vilma Väänänen, Otto E. Stenberg, Teemu J. Häkkinen, Jean-Christophe François, Robert J. Asher, Ophir D. Klein, Martin Holzenberger, Jukka Jernvall

Cell Biology

Ectopic activation of the polar physique extrusion pathway triggers cell fragmentation in preimplantation embryos
Diane Pelzer, Ludmilla de Plater, Peta Bradbury, Adrien Eichmuller, Anne Bourdais, Guillaume Halet, Jean-Léon Maître

The RNA-binding protein Adad1 is critical for germ cell upkeep and meiosis in zebrafish
Kazi Nazrul Islam, Anuoluwapo Ajao, Katrin Henke, Kellee R. Siegfried

VCP acts downstream of tTAFs to downregulate mono-ubiquitinated H2A and promote spermatocyte differentiation in Drosophila
Tyler J. Butsch, Olga Dubuisson, Alyssa E. Johnson, Ok. Adam Bohnert

ClpP/ClpX deficiency impairs mitochondrial capabilities and mTORC1 signaling throughout spermatogenesis and meiosis
Chenxi Guo, Yuan Xiao, Jingkai Gu, Zhe Hu, Jiahuan Zheng, Renwu Hua, Zhuo Hai, Jiaping Su, Jian V. Zhang, William S.B. Yeung, Tianren Wang

C. elegans germline cell division from Ng, et al.

Cleavage furrow-directed cortical flows bias mechanochemical pathways for PAR polarization within the C. elegans germ lineage
KangBo Ng, Nisha Hirani, Tom Bland, Joana Borrego-Pinto, Nathan W. Goehring

Constriction forces imposed by basement membranes regulate developmental cell migration
Ester Molina López, Anna Kabanova, Maria D. Martín-Bermudo

The vascular gene Apold1 is dispensable for regular improvement however controls angiogenesis below pathological circumstances
Zheng Fan, Raphaela Ardicoglu, Aashil A. Batavia, Ruslan Rust, Lukas von Ziegler, Rebecca Waag, Jing Zhang, Thibaut Desgeorges, Oliver Sturman, Hairuo Dang, Rebecca Weber, Andreas E. Moor, Martin E. Schwab, Pierre-Luc Germain, Johannes Bohacek, Katrien De Bock

Modelling

Dynamic readout of the Hh gradient within the Drosophila wing disc reveals pattern-specific tradeoffs between robustness and precision
Rosalío Reyes, Arthur D. Lander, Marcos Nahmad

Homeostasis, harm and restoration dynamics at a number of scales in a self-organizing intestinal crypt
Louis Gall, Carrie Duckworth, Ferran Jardi, Lieve Lammens, Aimée Parker, Ambra Bianco, Holly Kimko, D. Mark Pritchard, Carmen Pin

Spatial-temporal order-disorder transition in angiogenic NOTCH signaling controls cell destiny specification
Tae-Yun Kang, Federico Bocci, Qing Nie, José Nelson Onuchic, Andre Levchenko

Instruments & Sources

Molecular and spatial design of early pores and skin improvement
Tina Jacob, Karl Annusver, Paulo Czarnewski, Tim Dalessandri, Maria Eleni Kastriti, Chiara Levra Levron, Marja L Mikkola, Michael Rendl, Beate M Lichtenberger, Giacomo Donati, Åsa Björklund, Maria Kasper

Vessel Metrics: A python based mostly software program instrument for automated evaluation of vascular construction in confocal imaging
Sean D. McGarry, Cynthia Adjekukor, Suchit Ahuja, Jasper Greysson-Wong, Idy Vien, Kristina D. Rinker, Sarah.J. Childs

Institution of Bovine Trophoblast Stem Cells
Yinjuan Wang, Leqian Yu, Jie Li, Linkai Zhu, Hao Ming, Carlos Pinzon Arteaga, Hai-Xi Solar, Jun Wu, Zongliang Jiang

Bovine blastocyst like constructions derived from stem cell cultures
Carlos A. Pinzón-Arteaga, Yinjuan Wang, Yulei Wei, Leijie Li, Ana Elisa Ribeiro Orsi, Giovanna Scatolin, Lizhong Liu, Masahiro Sakurai, Jianfeng Ye, Leqian Yu, Bo Li, Zongliang Jiang, Jun Wu

Mouse eye vasculature from Krimpenfort, et al.

Anatomy of the whole mouse eye vasculature in improvement and pathology explored by light-sheet fluorescence microscopy
Luc Krimpenfort, Maria Garcia-Collado, Tom van Leeuwen, Filippo Locri, Anna-Liisa Luik, Antonio Queiro-Palou, Shigeaki Kanatani, Helder André, Per Uhlén, Lars Jakobsson

Histology-associated transcriptomic heterogeneity in ovarian folliculogenesis revealed by quantitative single-cell RNA-sequencing for tissue sections with DRaqL
Hiroki Ikeda, Shintaro Miyao, So Nagaoka, Takuya Yamamoto, Kazuki Kurimoto

A ligand-receptor interactome atlas of the zebrafish
Milosz Chodkowski, Andrzej Zielezinski, Savani Anbalagan

A cell atlas of human adrenal cortex improvement and illness
Ignacio del Valle, Matthew D Younger, Gerda Kildisiute, Olumide Ok Ogunbiyi, Federica Buonocore, Ian C Simcock, Eleonora Khabirova, Berta Crespo, Nadjeda Moreno, Tony Brooks, Paola Niola, Katherine Swarbrick, Jenifer P Suntharalingham, Sinead M McGlacken-Byrne, Owen J Arthurs, Sam Behjati, John C Achermann

Growing old Fly Cell Atlas Identifies Exhaustive Growing old Options at Mobile Decision
Tzu-Chiao Lu, Maria Brbić, Ye-Jin Park, Tyler Jackson, Jiaye Chen, Sai Saroja Kolluru, Yanyan Qi, Nadja Sandra Katheder, Xiaoyu Tracy Cai, Seungjae Lee, Yen-Chung Chen, Niccole Auld, Doug Welsch, Samuel D’Souza, Angela Oliveira Pisco, Robert C. Jones, Jure Leskovec, Eric C. Lai, Hugo J. Bellen, Liqun Luo, Heinrich Jasper, Stephen R. Quake, Hongjie Li

Manufacturing and Characterization of Monoclonal antibodies to Xenopus proteins
Brett Horr, Ryan Kurtz, Ankit Pandey, Benjamin G Hoffstrom, Elizabeth Schock, Carole LaBonne, Dominique Alfandari

Tissue microenvironment dictates the state of human induced pluripotent stem cell-derived endothelial cells of distinct developmental origin in 3D cardiac microtissues
Xu Cao, Maria Mircea, Francijna E. van den Hil, Hailiang Mei, Katrin Neumann, Konstantinos Anastassiadis, Christine L. Mummery, Stefan Semrau, Valeria V. Orlova

Subsequent-generation plasmids for transgenesis in zebrafish and past
Cassie L. Kemmler, Hannah R. Moran, Brooke F. Murray, Aaron Scoresby, John R. Klem, Rachel L. Eckert, Elizabeth Lepovsky, Sylvain Bertho, Susan Nieuwenhuize, Sibylle Burger, Gianluca D’Agati, Charles Betz, Ann-Christin Puller, Anastasia Felker, Karolína Ditrychová, Seraina Bötschi, Markus Affolter, Nicolas Rohner, C. Ben Pretty, Kristen M. Kwan, Alexa Burger, Christian Mosimann

Fatecode: Cell destiny regulator prediction utilizing classification autoencoder perturbation
Mehrshad Sadria, Anita Layton, Sidharta Goyal, Gary D. Bader

The protooncogene Ski regulates the neuron-glia change throughout improvement of the mammalian cerebral cortex
Alice Grison, Zahra Karimaddini, Jeremie Breda, Tanzila Mukhtar, Marcelo Boareto, Katja Eschbach, Christian Beisel, Dagmar Iber, Erik van Nimwegen, Verdon Taylor, Suzana Atanasoski

The compact Casπ (Cas12l) ‘bracelet’ offers a singular structural platform for DNA manipulation
Ao Solar, Cheng-Ping Li, Zhihang Chen, Shouyue Zhang, Danyuan Li, Yun Yang, Lengthy-Qi Li, Yuqian Zhao, Kaichen Wang, Zhaofu Li, Jinxia Liu, Sitong Liu, Jia Wang, Jun-Jie Gogo Liu

Human telencephalic organoids from Martins-Costa, et al.

Morphogenesis and improvement of human telencephalic organoids within the absence and presence of exogenous ECM
Catarina Martins-Costa, Vincent Pham, Jaydeep Sidhaye, Maria Novatchkova, Angela Peer, Paul Möseneder, Nina S. Corsini, Jürgen A. Knoblich

Single Cell transcriptional evaluation of ex vivo fashions of cortical and hippocampal improvement identifies distinctive longitudinal tendencies
Daniel Ok. Krizay, David B. Goldstein, Michael J. Boland

Selective volumetric excitation and imaging for single molecule localization microscopy in multicellular techniques
Tommaso Galgani, Yasmina Fedala, Romeo Zapata, Laura Caccianini, Virgile Viasnoff, Jean-Baptiste Sibarita, Rémi Galland, Maxime Dahan, Bassam Hajj

Predicting regulators of epithelial cell state by regularized regression evaluation of single cell multiomic sequencing
Nicolas Ledru, Parker C. Wilson, Yoshiharu Muto, Yasuhiro Yoshimura, Haojia Wu, Amish Asthana, Stefan G. Tullius, Sushrut S. Waikar, Giuseppe Orlando, Benjamin D. Humphreys

A toolkit for changing Gal4 into LexA and Flippase transgenes in Drosophila
Sasidhar Karuparti, Ann T. Yeung, Bei Wang, Pedro F. Guicardi, Chun Han

Using energetic studying within the optimization of tradition medium for mammalian cells
Takamasa Hashizume, Yuki Ozawa, Bei-Wen Ying

Integrating human iPSC-derived macrophage progenitors into retinal organoids to generate a mature retinal microglial area of interest
Ayumi Usui-Ouchi, Sarah Giles, Yasuo Ouchi, Elizabeth A Mills, Martin Friedlander, Kevin T Eade

Analysis observe & training

A Pilot Survey of Authors’ Experiences with Poor Peer Evaluation Practices
Kyle McCloskey, Jon F. Merz

Public exams could lower nervousness and facilitate deeper conceptual considering
Benjamin Wiggins, Leah Lily, Carly Busch, Meta Landys, J. Gwen Shlichta, Tianhong Shi, Tandi Ngwenyama

Does it pay to pay? A comparability of the advantages of open-access publishing throughout varied sub-fields in Biology
Amanda D. Clark, Tanner C. Myers, Todd D. Steury, Ali Krzton, Julio A. Yanes, Angela Barber, Jacqueline L. Barry, Subarna Barua, Katherine M. Eaton, Devadatta Gosavi, Rebecca L. Nance, Zahida H. Pervaiz, Chidozie G. Ugochukwu, Patricia Hartman, Laurie S. Stevison

Bridging the hole between formal concept and scientific reform practices
Erkan Buzbas, Berna Devezer

Taxonomy of interventions at educational establishments to enhance analysis high quality
Alexandra R Davidson, Ginny Barbour, Shinichi Nakagawa, Alex O. Holcombe, Fiona Fidler, Paul P Glasziou

The Australian educational STEMM office post-COVID: an image of disarray
Katherine Christian, Jo-ann Larkins, Michael R. Doran

Placing on educational armor: How Black physicians and trainees take stances to make racism seen amidst publishing constraints
M. Johnson, L.A. Maggio, A. Konopasky

SCIP: a self-paced summer season coding program creates group and will increase coding confidence
Rochelle-Jan Reyes, Olivia Pham, Ryan Fergusson, Niquo Ceberio, Candace Clark, C Sarah Cohen, Megumi Fuse, Pleuni Pennings

Evaluating scientific abstracts generated by ChatGPT to unique abstracts utilizing a synthetic intelligence output detector, plagiarism detector, and blinded human reviewers
Catherine A. Gao, Frederick M. Howard, Nikolay S. Markov, Emma C. Dyer, Siddhi Ramesh, Yuan Luo, Alexander T. Pearson

The publish December in preprints appeared first on the Node.

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